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Table 1 Gene–protein network involvement of 16 prevalent high-confidence NDD genes

From: Reflections on the genetics-first approach to advancements in molecular genetic and neurobiological research on neurodevelopmental disorders

Gene

Wnt/β-catenin

FMRP

CHD8

TBR1

ADNP

 

[7]

ST [20]a

ST [23]

ARID1B

ST

[7]

ST [20]a

[23]

ASH1L

  

ST

 

ASXL3

  

ST

 

CHD8

ST [14]

ST [7]

[20]

ST

DYRK1A

ST

ST

ST

ST [23]

FOXP1

ST

 

ST

ST

GRIN2B

ST

ST [7]

ST

ST [23]

MECP2

 

ST

ST

ST

POGZ

  

ST [20]a

ST [23]

PTEN

ST [14]

ST

ST [20]

 

SCN2A

 

ST [7]

ST [20]

ST [23]

SHANK3

  

[20]

 

KMT5B

  

ST [20]a

 

SYNGAP1

 

ST

ST [20]a

 

WDFY3

 

[7]

ST

 
  1. Note: Numbers indicate sources (see References) that report gene involvement in each category. ST, STRING [24] interaction score of at least 0.30 with the protein as the central node. aGene had CHD8 binding sites but fold change was not statistically significant, as reported in [20]. CHD2 was not included in the table as it was not involved in any of the reviewed protein pathways