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Copy number variation at the 22q11.2 locus influences prevalence, severity, and psychiatric impact of sleep disturbance



Sleep disturbance is common, impairing, and may affect symptomatology in developmental neuropsychiatric disorders. Here, we take a genetics-first approach to study the complex role of sleep in psychopathology. Specifically, we examine severity of sleep disturbance in individuals with a reciprocal copy number variant (CNV) at the 22q11.2 locus and determine sleep’s effect on psychiatric symptoms. CNVs (deletion or duplication) at this locus confer some of the greatest known risks of neuropsychiatric disorders; recent studies suggest the 22q11.2 deletion negatively impacts sleep, but sleep disruption associated with 22q11.2 duplication has not been investigated.


We compared subjective sleep disturbance and its relationship to psychiatric symptoms cross-sectionally and longitudinally over 1 year in 107 22q11.2 deletion (22qDel) carriers (14.56±8.0 years; 50% male), 42 22q11.2 duplication (22qDup) carriers (16.26±13.1 years; 54.8% male), and 88 age- and sex-matched controls (14.65±7.4 years; 47.1% male). Linear mixed models were used to compare sleep disturbance, assessed via the Structured Interview for Psychosis-Risk Syndromes (SIPS), across groups. Next, CNV carriers were categorized as good or poor sleepers to investigate sleep effects on multiple neurobehavioral traits: psychosis-risk symptoms (SIPS), autism-related behaviors (Repetitive Behavior Scale (RBS) and Social Responsiveness Scale (SRS)), real-world executive function (Behavior Rating Inventory of Executive Function (BRIEF)), and emotional/behavioral problems (Child Behavior Checklist (CBCL)). Linear mixed models tested the effect of sleep category and a group-by-sleep interaction on each measure, cross-sectionally and longitudinally.


22qDel and 22qDup carriers both reported poorer sleep than controls, but did not differ from each other. Cross-sectionally and longitudinally, poor sleepers scored higher on positive symptoms, anxious/depressed, somatic complaints, thought problems, and aggressive behavior, as well as RBS and SRS total scores. There were significant group-by-sleep interactions for positive symptoms and the majority of CBCL subdomains, in which the difference between good and poor sleepers was larger in 22qDel compared to 22qDup.


Our findings indicate that CNVs at the 22q11.2 locus impact sleep which, in turn, influences psychopathology. Sleep disturbances can differentially impact psychopathology, depending on 22q11.2 gene dosage. Our findings serve as a starting point for exploring a genetic basis for sleep disturbance in developmental neuropsychiatric disorders.


Disruptions in sleep quality and physiology are widely prevalent and impairing in individuals with developmental neuropsychiatric disorders, including autism spectrum disorder (ASD) [1], psychotic spectrum disorders [2, 3], and attention-deficit hyperactivity disorder (ADHD) [1, 4]. Sleep has a complex, bidirectional relationship with psychiatric symptoms. For example, prolonged sleep deprivation can cause temporary perceptual distortions, disordered thinking, and hallucinations [5], while psychological distress related to psychosis worsens sleep quality and continuity. Further, a behavioral sleep intervention can improve sleep, psychosis symptoms, and psychological distress [6, 7] in patients with psychotic illness. These sleep improvements were shown to mediate changes in hallucinations and paranoia [8]. In ASD, several studies have found strong relationships between sleep disturbances and ASD-related behaviors, including restricted and repetitive behaviors, sensory sensitivities, and externalizing symptoms [9,10,11,12]. In a study of boys with ASD, sleep disturbance was found to moderate the relationship between ASD symptom severity and problem behaviors [13]. Sleep has also been shown to play a role in the executive functioning difficulties often observed in developmental psychiatric disorders [14, 15]. For example, a recent cross-sectional study found sleep mediated the relationships between real-world executive function and both overall autistic traits and restrictive and repetitive behaviors [15]. Moreover, clinical trials of effective sleep interventions in children with neurodevelopmental disorders improved a range of behavioral and mood symptoms for at least 6 months post-treatment [9,10,11]. Taken together, these findings offer compelling evidence that sleep may be a modifiable treatment target for psychiatric symptoms and related impairments in executive functioning, making a deep understanding of the role of sleep in these disorders an area of critical research interest. However, the lack of longitudinal studies focused on elucidating mechanistic relationships limits our current understanding.

The vast heterogeneity within psychiatric diagnostic classifications and the complex relationship between sleep, environment, genetics, and neurobiology pose challenges for studying sleep’s role in psychopathology. The gold-standard of measuring sleep, polysomnography (PSG), requires research participants to sleep in a lab, often for multiple nights, while wearing electroencephalography (EEG) and physiological sensors. This poses another challenge for sleep studies, particularly in pediatric and psychiatric populations. While parent-reported estimates of sleep (i.e., sleep duration, sleep latency) have varying validity [16,17,18,19,20], parent reports of overall sleep quality on sleep questions have been proven to be valid in several studies [16, 21]. Therefore, parent-report questionnaires are often the most feasible way to measure sleep; while these metrics have shown to correlate well with “gold standard” laboratory-based measures [16, 21], they cannot address the underlying biology critical for understanding sleep’s role in psychopathology. One strategy to address these challenges is to take a “genetics-first” approach of studying individuals with a known genetic etiology, such as copy number variations (CNVs) that confer large effects on psychopathology risk. Dissecting sleep changes associated with CNVs could reveal genetic influences on sleep and the brain relevant to idiopathic disorders.

The 22q11.2 locus is a genomic hotspot with highly conserved genes critical to neurodevelopment [22]. CNVs in this locus (deletions or duplications) confer some of the greatest known risks of developmental neuropsychiatric disorders [23]. 22q11.2 deletion syndrome (22qDel; also known as DiGeorge Syndrome), a 1.5 to 2.6 megabase hemizygous deletion at this locus, is one of the most common genetic syndromes, occurring in up to 1 in ~4000 live births [24]. It is associated with congenital malformations, developmental delay (DD), and intellectual disability (ID), as well as multiple psychiatric disorders including ADHD, ASD, and anxiety disorders [25]. This deletion is also one of the greatest known risk factors for developing a psychotic disorder, with up to 20-fold increased risk [26,27,28,29,30] compared to the general population, and an approximately 10-fold increased risk compared to populations with other neurodevelopmental disorders [31].

Notably, a duplication in the 22q11.2 region (22qDup) also confers increased risk of developmental psychiatric disorders, but occurs ~2.5 times more frequently than a deletion [23]. Relative to the 22qDel, little is known about the 22qDup phenotype. Notably, however, several recent studies reported that 22qDup is associated with a significantly lower rate of schizophrenia compared to the general population, suggesting a potential gene-dosage effect of the 22q11.2 locus on schizophrenia risk [29, 32, 33]. Further 22q11.2 gene-dosage effects have been found for both brain structure [34] and neurocognitive profiles [35]. While both the 22qDel and 22qDup confer increased risk for neurodevelopmental disorders, they differentially modulate cognitive functioning and psychosis-related symptoms [35]. Similarly, while both 22q11.2 CNVs exhibit increased ASD symptomatology compared to controls, they displayed distinct ASD symptom profiles [35].

In addition, recent evidence suggests the 22qDel confers elevated rates of sleep problems [36,37,38,39]. The proportion of 22qDel carriers with clinically significant sleep problems has been reported to range from 60 to 97% [37, 38]. Relative to controls, subjects with 22qDel report increased sleep latency, nighttime waking, sleep anxiety, sleep-disordered breathing, daytime sleepiness, and decreased sleep duration and quality [36,37,38,39]. These sleep disturbances were associated with cognitive and immune dysfunction, ADHD, and anxiety disorders [36, 37]. To our knowledge, no studies have yet investigated sleep disturbance associated with 22qDup. Despite the close associations between sleep, executive function, and psychiatric symptoms in other populations [40,41,42], little is known about sleep and its effect on psychiatric symptomatology in reciprocal 22q11.2 CNVs, and the current literature is limited by small sample sizes at a single timepoint. Given the high rate of sleep disturbances and neurodevelopmental disorders, and the opportunity to study gene dosage effects, investigation of reciprocal 22q11.2 CNVs offers a rich opportunity to learn about the mechanisms of sleep disturbance relevant to psychiatric disorders.

Our study aimed to address these gaps and to serve as a starting point for understanding biological underpinnings of sleep’s role in psychopathology by characterizing sleep and its effect on psychiatric symptoms across in the largest known cohort of reciprocal 22q11.2 CNV carriers. First, we aimed to examine the prevalence and severity of self-reported sleep disturbance in 22qDel and 22qDup carriers compared to controls at baseline and longitudinally over 1 year. Since the 22qDel confers an overall more severe phenotype than the 22qDup, we hypothesize that 22qDel carriers, but not 22qDup carriers, will exhibit worse sleep than controls. Due to the elevated risk of psychosis, which is associated with sleep disturbance, we also hypothesize that sleep will worsen over time in the 22qDel group but not the 22qDup group. The next aim was to test the hypothesis that sleep disturbance is an independent feature of 22q11.2 CNVs by comparing sleep disturbances between the three subject groups and controlling for medications and psychiatric comorbidities. Lastly, we sought to explore how sleep disturbances are related to common psychiatric features associated with 22q11.2 CNVs (i.e., positive psychosis-risk symptoms, ASD-related symptoms, executive function, and other emotional and behavioral problems). We expected poor sleep to have a greater effect on psychiatric symptoms in the 22qDel compared to the 22qDup group. To accomplish this, we assessed the relationship between sleep and developmental psychiatric symptoms and neurobehavioral traits cross-sectionally and longitudinally over 1 year and tested for differences in these relationships between CNV groups. Given the complex, bidirectional nature of relationships between sleep and psychiatric symptoms, we include an analysis of longitudinal data as an exploratory study of changes in sleep over time and the relationship between sleep and symptoms over time. Longitudinal assessment of sleep will inform future hypotheses for predictive analyses.

Materials and methods


The total sample consisted of 237 participants: 107 with a molecularly confirmed 22q11.2 deletion, 42 with a confirmed 22q11.2 duplication, and 88 healthy controls. All groups were age- and sex-matched (see Table 1 for sample demographics). Participants were a subset of those recruited for an ongoing longitudinal study conducted at University of California at Los Angeles. The majority of participants in this study were included in previous cross-sectional studies reporting on different research questions [34, 35]. For the longitudinal portion of the present study, only the first two study timepoints were included, as maximal data were available. Patients were recruited from local clinics, national support groups, and other online avenues. Control participants were recruited from the same communities as CNV carriers through online postings, local schools, pediatric clinics, and other locations in the community.

Table 1 Demographic and clinical characteristics at baseline and 1-year follow-up

Participants with significant neurological or medical conditions (unrelated to 22q11.2 CNVs) affecting brain structure or function, previous head trauma with loss of consciousness, insufficient English fluency, and/or substance abuse/dependence within the past 6 months were excluded. All participants gave verbal and written informed consent to participate in the study. Participants under 18 years of age provided written assent and their parent/guardian provided written consent. The University of California at Los Angeles Institutional Review Board approved all study procedures and documents.


Clinical and cognitive assessments appropriate for participants’ developmental stage were administered to all participants (See Supplementary Table 1 for summary of age ranges for each measure). Supervised clinical psychology doctoral students administered structured psychodiagnostic evaluations to assess for psychiatric diagnoses. All diagnoses were determined by trained clinicians who participated in ongoing quality assurance and case consensus procedures. Training, reliability, and quality assurance procedures for psychodiagnostic assessments and clinician rating scales are detailed in prior publications [35, 43].

To study the relationship between sleep and clinical symptoms and neurobehavioral traits, we selected assessments measuring traits and behaviors associated with sleep in other clinical populations including ASD and clinical high-risk for psychosis populations [13, 14, 44,45,46]. We tested if there was an effect of sleep on positive psychosis-risk symptoms, Autism-related behaviors, real-world executive function, and emotional or behavioral problems. For a secondary analysis, if there was a significant (q<0.05) or marginally significant effect (q<0.1) of sleep on the primary outcome measure, the measure was broken down into its subscales to test for differential effects between subdomains of each trait measure (see supplementary information).

Psychosis-relevant measures

The Structured Interview for Psychosis-Risk Syndromes (SIPS) [47], a clinician-rated semi-structured interview, was used to measure psychosis-risk symptoms. The scale includes positive, negative, disorganized, and general symptoms and interviews both the participant and their parent to determine clinical ratings. Participants over the age of ten completed the SIPS interview, administered by a trained clinician. The primary outcome for the present analysis was positive psychosis-risk symptom score.

Autism spectrum measures

We chose to assess repetitive behaviors and social deficits because both of these domains are associated with sleep in studies of idiopathic ASD [9, 11, 15, 42, 48, 49]. The Repetitive Behavior Scale (RBS) [50] is a parent-report scale used to measure stereotyped, self-injurious, restrictive, need for sameness, compulsive, and ritualistic behaviors. A higher score on the RBS subscales indicates an increased frequency of behaviors. To measure social communication deficits, we used the Social Responsiveness Scale-2nd edition (SRS) [51], a parent-report rating scale measuring dysfunctional social behavior with the subdomains: awareness, cognition, communication, autistic traits, and motivation. Further information on scoring methods is detailed in Jalal et al. [52].

Real-world executive function

The Behavior Rating Inventory of Executive Function [53] (BRIEF) was used to measure parent-reported real-world executive function in participants aged 6–18. A previous study in a population-based cohort found associations between sleep, autistic traits, and the BRIEF [15], making it a measure of interest for the present study. The BRIEF consists of an overall global composite score and eight clinical subscales including shifting, emotional, monitoring, inhibition, plan/organize, and organization/material. The overall global composite score was used as the primary outcome of real-world executive function.

Emotional or behavioral problems

We also investigated the relationship between sleep and emotional or behavioral problems on the Child Behavior Checklist (CBCL) [54, 55]. The CBCL subdomains are anxious/depressed, withdrawn/depressed, somatic complaints, social problems, attention problems, rule breaking, aggressive behavior, and thought problems. The CBCL was completed by the parents of participants aged 6–18.

Sleep measure

To measure sleep disturbance on a continuous scale, we used item G1 from the SIPS (SIPSG1), which rates level of sleep disturbance on a six-point scale. A rating of six corresponds with severe sleep disturbance. The SIPS has not been validated in children under the age of 10, therefore analyses using this variable did not include participants younger than 10. To include the entire age range of our cohort in analyses of sleep effects on psychiatric symptoms, we created a categorical variable which classified participants as either good or poor sleepers. Previous studies in children with developmental psychiatric disorders have validated the use of a categorical variable based on parent-reported sleep using sleep questionnaires, actigraphy, and PSG [42, 56]. Participants 10 years and older were classified as poor sleepers if they scored a 3 or higher on SIPSG1. Participants 10 years or younger were classified as a poor sleeper if they scored 2 on the CBCL checklist item 100 (CBCL100). CBCL100 asked parents to rate their child’s trouble sleeping on a scale from 0 to 2 (not true to very true or often true). The comparability of this categorical sleep variable was verified through correlations between the CBCL100 and SIPSG1 (see Supplementary Figure 1, Supplementary Tables 1, 2) and sensitivity analyses which exclude subjects who did not complete the SIPS (see Supplementary Figures 2, 3 and Supplementary Tables 3, 4). CBCL100 and SIPSG1 were removed from total scores on the SIPS and CBCL. CBCL100 has been validated to be concordant with sleep questionnaires, sleep diaries, actigraphy, and PSG [57, 58] while SIPSG1 has been used to measure sleep disturbance in numerous studies of individuals at high-risk for developing a psychotic disorder [59,60,61]

Statistical analyses

All statistical analyses were performed, and figures created, in R 4.0.2 [62] using the packages lme4 [63] and ggplot2 [64]. To address the question of how sleep disturbance in reciprocal 22q11.2 CNV carriers compares to controls, we conducted linear mixed models with sleep as the dependent variable (using the continuous variable) and participant group (22qDel vs. 22qDup vs. control, with control as the reference group) as the independent variable. We analyzed each model cross-sectionally (at baseline) and longitudinally (two timepoints across approximately 1 year). The longitudinal model included a group-by-time interaction. All models included age and biological sex as covariates and participant ID as the random effects term. To test for differences between CNV groups, we re-ran the same models including only participants in the CNV groups (22qDel as the reference group). To determine if differences in sleep between CNV groups and controls could be attributed to differences in psychiatric comorbidities or medications between groups, we independently added variables measuring attention, current medication, Full Scale IQ, ASD diagnosis, and psychotic disorder diagnosis into the models to test if the group difference remained statistically significant when accounting for these variables. Within each model, a false discovery rate (FDR) correction was applied on the effects of subject group.

To test the relationship between sleep disturbance and clinical symptoms, we conducted linear mixed models with each symptom domain as the dependent variable and the sleep categorization (good vs. poor sleeper) and participant group (22qDel vs. 22qDup; 22qDel as the reference group) as independent variables. Cross-sectional models included a group-by-sleep interaction and longitudinal models included a group-by-time interaction. All models included age and biological sex as covariates and participant ID as the random effects term. Due to small number of poor sleepers in the control group, only CNV carriers were included in analyses of psychiatric symptoms. To control for multiple comparisons within each domain, FDR correction was applied. Only the main effects of sleep, group, and group-by-sleep interaction were included in the FDR correction, since effects of time, age, and sex are not the primary variables of interest in this study. A q-value <0.05 was considered statistically significant.


Participant demographics

Demographic variables for each group at each timepoint are reported in Table 1. As expected, both 22qDel and 22qDup groups showed significantly elevated rates of ASD diagnoses and medication use at both timepoints compared to controls. Consistent with previous literature [32], 22qDel reported significantly higher rates of psychotic disorders compared to the other two groups. There was also a significant difference in highest parental education level between the 22qDel and 22qDup group. There were no significant differences in demographic or clinical characteristics of the samples between baseline and 1-year follow-up (p >0.196).

Comparison of sleep disturbance between 22q11.2 CNV carriers and controls

Both 22q11.2 deletion and duplication groups reported significantly greater sleep disturbance on the SIPS compared to controls, cross-sectionally and longitudinally (Fig. 1, Table 2). Sleep disturbance severity was not statistically different between 22qDel and 22qDup in either model (cross-sectional: b=0.015, q=0.940; longitudinal: b=0.006, q=0.982). Sleep disturbance did not change over time (b=−0.074, p=0.754), and there were no statistically significant group-by-time interactions. There was a significant effect of age both cross-sectionally and longitudinally such that older subjects slept worse than younger subjects (cross-sectional: b=0.198, p=0.004; longitudinal: b=0.213, p<0.001). These results are summarized in Table 2. About one-third of both CNV groups at each timepoint met the poor sleeper criteria, while <4% of controls met these criteria (Table 1).

Fig. 1
figure 1

Quantitative measure of sleep disturbance across groups. Sleep disturbance, assessed via the SIPS, is significantly worse in CNV carriers compared to controls cross-sectionally (q<0.001) and longitudinally (q<0.001). However, there is no significant difference in sleep quality between CNV groups (q>0.940). Large dots represent the group mean and 95% confidence interval at each timepoint

Table 2 Differences in SIPS-measured sleep disturbance between groups

As shown in Table 2, the differences in the continuous sleep measure between CNV groups and controls remained significant when medication, attention, ASD diagnosis, and psychotic disorder diagnosis were each added to the models. Both cross-sectionally and longitudinally, subjects on antipsychotics reported greater sleep disturbance compared to those on no medication. Across groups at each timepoint, there was a main effect of attention on sleep such that individuals with more attention problems reported worse sleep disturbance. The effect of ASD and the effect of psychotic disorders on sleep disturbance did not reach significance. There were no significant differences in sleep between CNV groups when medication, attention, ASD diagnosis, and psychotic disorder diagnosis were included in the models.

When IQ was added to both models, the difference in sleep between 22qDel and controls remained significant, but the difference between 22qDup and controls was attenuated to a trend level (Table 2). There remained no significant differences in sleep disturbance severity between CNV groups when IQ was added to the model.

Effect of sleep on positive psychosis-risk and autism-related symptoms

Across CNV groups, poor sleepers reported more severe positive psychosis-risk symptoms than good sleepers, both cross-sectionally (Table 3) and longitudinally (Table 4), as shown in Fig. 2. There was a significant group-by-sleep interaction for positive symptoms at baseline (Fig. 3). There was a bigger difference in positive symptoms between good and poor sleepers in the 22qDel group compared to the 22qDup group. 22qDel subjects reported higher severity of positive psychosis-risk symptoms longitudinally compared to 22qDup.

Table 3 Results of cross-sectional models
Table 4 Results of longitudinal models
Fig. 2
figure 2

Clinical measures in good and poor sleepers at each timepoint within 22q11.2 CNV groups. In both cross-sectional and longitudinal analyses across CNV groups, poor sleepers score higher (i.e., more pathological) on positive symptoms (cross-sectional: q=<0.001, longitudinal: q<0.001), total repetitive behaviors (cross-sectional: q= 0.005, longitudinal: q=0.018), and social responsiveness (cross-sectional: q= 0.026, longitudinal: q=0.015 ). The effect of sleep on BRIEF global composite score failed to survive FDR correction (cross-sectional: p= 0.0, longitudinal: p=0.0). Large dots represent the group mean and 95% confidence interval for good and poor sleepers at each timepoint

Fig. 3
figure 3

Baseline CNV group-by-sleep interactions. There were significant group-by-sleep interactions at baseline for positive psychosis-risk symptoms (q=0.041), and CBCL-measured withdrawn/depressed (q=0.020), somatic complaints (q=0.007), social problems (q=0.017), thought problems (q=0.012), attention problems (q=0.009), rule-breaking (q=0.006), and aggressive behaviors subscales (q=0.004). Large dots represent the group mean and 95% confidence interval for good and poor sleepers in each subject group

There was a significant effect of sleep categorization on total RBS and total SRS scores at baseline (Table 3, Fig. 2) and across timepoints (Table 4; Supplementary Figure 2). There were no significant group-by-sleep interactions for any autism-related domains.

Effect of sleep on real-world executive function

Poor sleepers, across CNV groups, scored worse on the global composite overall index on the BRIEF, both cross-sectionally (Table 3, Fig. 2) and longitudinally (Table 4, Fig. 2), although the effect of sleep in both models was marginally significant.

Effect of sleep on behavioral or emotional problems

Cross-sectionally across CNV groups, poor sleepers scored significantly higher on all subdomains of the CBCL (Table 3, Fig. 4). There were significant group-by-sleep interactions on all subdomains except anxious/depressed, such that there was a larger difference between good and poor sleepers in 22qDel carriers compared to 22qDup carriers (Fig. 3). Longitudinally, poor sleepers across CNV groups scored significantly higher on the anxious/depressed, somatic complaints, thought problems, and aggressive behaviors subdomains. Poor sleepers scored marginally higher than good sleepers on the attention subscale. There was a trend towards a main effect of group, in which the 22qDel group scored higher than the 22qDup group on somatic complaints and thought problems.

Fig. 4
figure 4

CBCL subdomain scores in good and poor sleepers at each timepoint within 22q11.2 CNV groups. At baseline, there was a significant main effect of sleep category on all CBCL subdomains (q<0.017). Across timepoints, there was a significant main effect of sleep category on anxious/depressed (q=0.005), somatic complaints (q=0.038), thought problems (q<0.001), and aggressive behavior (q=0.002) subscales. There was a trend towards a significant effect of sleep category on attention problems (q=0.061). Large dots represent the group mean and 95% confidence interval for good and poor sleepers at each timepoint


In this study, we report four core, novel findings related to sleep and psychiatric symptomatology in 22q11.2 CNV carriers. First, similar to 22qDel, 22qDup was associated with more severe sleep disturbances than typically developing controls. Second, we found these sleep disturbances were independent of psychiatric conditions and medication usage. Third, sleep difficulties negatively impacted psychiatric symptomatology in both 22qDel and 22qDup carriers. Lastly, sleep disturbance had a differential impact on particular psychiatric symptoms in 22q11.2 CNV carriers; specifically, positive psychosis-risk symptoms, withdrawn/depressed symptoms, somatic complaints, social problems, thought problems, attention problems, rule breaking, and aggressive behavior.

In our first and second aims, we found both 22q11.2 CNV groups reported significantly poorer sleep than controls, cross-sectionally and longitudinally, even when controlling for psychiatric comorbidities and medications, supporting our hypothesis that sleep disturbance is an independent feature of 22q11.2 CNVs. Contrary to expectations, there was no difference in reported sleep disturbance between the two CNV groups. Increased sleep difficulty in 22qDel has been reported in previous cross-sectional studies [36,37,38,39]. In our study, about one-third of subjects in both the 22qDel and 22qDup groups were classified as poor sleepers, while prevalence rates of clinically significant sleep problems was previously reported to be greater than 60% in 22qDel carriers [37, 38]. This discrepancy could be attributed to different questionnaires used to classify significant sleep problems, and differing age groups. Our study reports on a cohort with a wide age range, which includes adult participants, while previous studies focused exclusively on children. This is the first study to investigate sleep disturbance in 22qDup carriers, so there is no data to compare with our cohort.

In the last aim, we found that across CNV groups, poor sleepers reported elevated psychiatric symptomatology relative to good sleepers. Poor sleep had a consistently strong effect across psychosis-risk symptoms subscales (SIPS) and emotional and behavior problems reported on the CBCL, similar to findings observed in idiopathic psychiatric disorders [59, 65]. This finding is also consistent with and builds upon prior literature in 22qDel carriers, which found poor sleep is associated with anxiety disorders, ADHD, and conduct disorders [37]. Poor sleep also had a strong effect on ASD-related measures (RBS, SRS) with poor sleepers exhibiting increased severity of repetitive behaviors and social impairments. This finding is consistent with a previous study in idiopathic ASD that found that sleep fragmentation was associated with an increased RBS total score and poor sleepers scored higher on ritualistic and compulsive subscales of the RBS compared to good sleepers with ASD [56]. Sleep fragmentation was associated with RBS total score [56]. Also consistent with previous findings in idiopathic ASD [46], we found total SRS score was significantly associated with sleep cross-sectionally and longitudinally, with poorer sleep being associated with elevated SRS scores over time. Contrary to expectations, the effect of sleep on the BRIEF global composite did not survive FDR correction at q<0.05 in either model. However, there was a trend towards a significant effect of sleep on the global composite score such that poor sleepers performed worse across CNV groups in both models. This trend is consistent with a previous study reporting sleep deficits were associated with a worse global composite score on the BRIEF [15]. Theoretically, it is possible that the BRIEF measures are not impacted by acute poor sleep as much as the other clinical measures. Perhaps chronic poor sleep over an extended period of time has a stronger impact on executive function than acute sleep disturbance. The data assessed in this study was not able to address this possibility, since we did not collect information on sleep disturbance duration.

We found sleep has a greater effect on psychiatric symptomatology—namely, positive psychosis-risk symptoms, and withdrawn/depressed, somatic complaints, social problems, thought problems, attention problems, rule breaking, and aggressive behaviors—in 22qDel carriers relative to 22qDup carriers. This suggests 22qDel carriers are more susceptible to the effects of poor sleep compared to 22qDup, which is consistent with the fact that the 22qDel often confers a more severe phenotype compared to the 22qDup [23]. This finding is also consistent with recent cross-sectional findings from our group that the 22qDel has a greater effect on IQ, psychosis-risk symptoms, and brain morphometry compared to the 22qDup [34, 35]. The differential impact of sleep on psychiatric symptoms in 22q11.2 CNV carriers suggests that gene dosage at the 22q11.2 locus may influence mechanisms involved in sleep’s relationship with symptoms of developmental psychiatric disorders. Further, it provides evidence for a genetic-basis of sleep disturbance in 22q11.2 CNVs, and perhaps idiopathic disorders, such as schizophrenia and ASD. This conclusion is supported by a recent study of the 22q11.2 locus in drosophila, which found knockout of the LZTR1 homolog gene on the 22q11.2 locus caused widespread sleep disturbance [66]. Further experiments revealed this gene affects sleep through GABAergic signaling, disruptions in which are also implicated in schizophrenia and ASD [67,68,69,70,71]. Taken together, these results suggest a genetic basis for sleep disturbance in 22q11.2 CNV carriers and associated psychiatric disorders. Further studies are required, in both humans and animal models, in order to identify underlying genetic and neurobiological mechanisms of sleep in 22q11.2 CNV carriers and determine how 22q11.2 genes impact the relationship between sleep and psychiatric symptoms, and if genes within this locus could contribute to sleep’s role in idiopathic disorders. Future studies should include measures of brain circuitry, sleep physiology, and gene expression.

In addition to studying the association between sleep and 22q11.2 CNVs, we also report a number of group differences between 22qDel and 22qDup carriers that have not previously been reported. First, as in Lin et al. [35], we found decreased stereotyped behaviors and increased positive and negative psychosis-risk symptoms in 22qDel carriers compared to 22qDup carriers. Expanding upon this finding, we also found 22qDel carriers reported more severe disorganized—but not general—psychosis-risk symptoms compared to 22qDup. On the CBCL, there was a trend towards a significant group difference in thought problems and somatic complaints. 22qDel carriers reported more thought problems than 22qDup carriers, which is consistent with increased rates of psychotic disorders in 22qDel carriers and decreased rates in 22qDup carriers [26,27,28,29,30, 32, 33]. Additionally, 22qDel carriers reported more somatic complaints, which could be attributed to increased medical problems reported in this population.

Generally, sleep disturbance is most common in adolescence and older age [72]. So, it is unsurprising that sleep disturbance worsened with older age in our analysis. However, a thorough investigation of sleep across the lifespan would likely require advanced methods of measuring sleep and analytical methods appropriate for testing non-linear effects, which is outside the scope of the present study. Additionally, there was no significant change is sleep disturbances across time in our sample. This could be due to a number of factors. First, since there was an effect of age, it is possible that the 1-year duration between visits was too short to observe changes in sleep disturbance. For example, the increased sleep disturbance in adolescence implies that one’s sleep would worsen more between ages 10 and 15 compared to between ages 10 and 11. So, while our study is the first investigation of longitudinal changes in sleep in 22q11.2 CNV carriers, it is possible that our data is not properly equipped to explore changes in sleep over time in this population. To address this question and to fully understand age-related changes in sleep, large-scale longitudinal assessments employing objective measures of sleep across several years are required.

In addition to contributing to the mechanistic understanding of the relationship between sleep and psychopathology, our findings also inform clinical knowledge of treating psychiatric symptoms in 22q11.2 CNV carriers. Our study suggests that an intervention that directly targets sleep could have multiple beneficial effects, with downstream influences on psychiatric symptoms and behavioral problems across diagnostic classifications in 22q11.2 CNV carriers. Further research is needed to test the effectiveness of individual sleep treatments in this population. Potential lines of study include clinical trials in 22q11.2 CNV carriers of behavioral sleep therapies, which have been effective in psychotic populations [6, 73], and melatonin, which has been effective in ASD populations [9, 11]. These clinical trials should not only test the ability of an intervention to treat sleep disturbance, but also its impact on neuropsychiatric symptoms.

As with most studies of rare disorders, there are several limitations of this study to consider. We were unable to collect objective, laboratory-based measures of sleep and did not administer a comprehensive sleep questionnaire. For younger participants, sleep disturbance scores were collected solely via parent report, while older subjects underwent a clinical interview. While we acknowledge the limitations of this measure, we found our two sleep measures were highly correlated. Further, a recent study found that parent-reported subjective sleep report was as valid as participant-reported subjective sleep report when compared to PSG recording [20] and another study concluded parental report of overall sleep quality and symptoms, similar to the methods used in the current study, is reliable [16]. However, it is important to consider that subjective sleep report and PSG-derived sleep measures capture two related but distinct sleep-related processes. While subjective sleep measures are valid, they do not capture information about sleep physiology and neurobiology, meaning we cannot make inferences about biological underpinnings of the observed relationships. Thus, our study focuses only on subjectively reported sleep disturbance and does not make inferences about objective measures of sleep or sleep physiology. Further, the nature of our sleep variable does not indicate the type of sleep disturbance exhibited, only its presence and severity. 22q11.2 CNVs are associated with craniofacial abnormalities, which can lead to increased rates of sleep-disordered breathing (SDB), such as obstructive sleep apnea [74, 75]. Sleep disturbance related to SDB confers a different clinical phenotype and affects downstream mechanisms differently than a sleep disturbance related to insufficient sleep [76, 77]. While it is possible that the observed difference in sleep disturbance between 22q11.2 CNV carriers and controls could be driven by higher rates of SDB in 22q11.2 CNV carriers, rates of airway problems and/or craniofacial abnormalities did not differ between poor sleepers and good sleepers (see Supplementary Information), so it is unlikely that these medical conditions accounted for the increased rates of poor sleepers. Nevertheless, future investigation of 22q11.2 CNV carriers should consider the differential impacts of sleep breathing disorders and disorders of insufficient sleep on brain structure, psychiatric symptoms, and neurobehavioral traits.

Another limitation to consider is the small sample size of the 22qDup group compared to that of the 22qDel and control groups. Unlike 22qDel carriers, 22qDup carriers often are not identified through clinical genetic testing due to the highly variable phenotype and less frequent medical comorbidity [23] , posing a recruitment challenge for this population. While the cohort of 22qDup included here is relatively modest, it is one of the largest cohorts reported in the literature to date. The challenge of recruiting subjects with a rare disorder (22qDel carriers and 22qDup carriers) led to a sample that is not racially diverse, an issue that we are attempting to better address in new studies underway. As a result, there were significantly fewer non-white participants in the 22qDel and 22qDup groups compared to the control group. Although unlikely, it is possible that this difference impacted the comparison of sleep across the three study groups.


In summary, our findings establish that the 22q11.2 locus impacts sleep which, in turn, associates with psychopathology. Further, sleep disturbances can differentially affect psychopathology, depending on gene dosage. These results contribute to our understanding of psychiatric symptoms in 22q11.2 CNV carriers and offer a potential intervention target. Our findings serve as a starting point for exploring a genetic basis for sleep disturbance in neurodevelopmental psychiatric disorders.

Availability of data and materials

The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.



22q11.2 deletion


22q11.2 duplication


Attention-deficit hyperactivity disorder


Autism spectrum disorder


Behavior Rating Inventory of Executive Function


Child Behavior Checklist


Child Behavior Checklist item 100


Copy number variation


Developmental delay




False discovery rate


Intellectual disability




Repetitive Behavior Scale


Structured Interview for Psychosis-Risk Symptoms


Structured Interview for Psychosis-Risk Syndromes item G1


Social Responsiveness Scale


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We are grateful to all participants, families, and staff who contributed to data collection.


This work is supported by National Institute of Mental Health Grant Nos. R01 MH085953 (to CEB) and U01MH101779 (to CEB) and the Simons Foundation (SFARI Explorer Award to CEB).

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KPO and CEB made substantial contributions to study conception, analyses, and drafting of the manuscript. LK oversaw recruitment and behavioral assessment. AL provided critical feedback on the manuscript. The authors read and approved the final manuscript.

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Supplementary Information

Additional file 1: Supplementary Table 1.

Summary of clinical measures, validated age range, age range of sample, reporter, and number of subjects who completed the measure. Supplementary Table 2. Scoring of Sleep Disturbance Item on SIPS. Supplementary Figure 1. Correlation between sleep items on SIPS and CBCL. Supplementary Table 3. Categorization of Participants According to Each Sleep Measure. Supplementary Figure 2. Summary scores of 22q11.2 CNV carriers who completed SIPS. Supplementary Figure 3. CBCL Scores of 22q11.2 CNV carriers who completed SIPS. Supplementary Table 4. Results of cross-sectional model including only participants who completed the SIPS sleep measure. Supplementary Table 5. Results of longitudinal models including only participants who completed SIPS sleep measure. Supplementary Table 6. Results of cross-sectional models. Supplementary Table 7. Results of longitudinal models. Supplementary Figure 4. SIPS subdomain scores in good and poor sleepers at each timepoint within 22q11.2 CNV groups. Supplementary Figure 5. RBS subdomain scores in good and poor sleepers at each timepoint within 22q11.2 CNV groups. Supplementary Figure 6. SRS subdomain scores in good and poor sleepers at each timepoint within 22q11.2 CNV groups. Supplementary Figure 7. BRIEF subdomain scores in good and poor sleepers at each timepoint within 22q11.2 CNV groups.

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O’Hora, K.P., Lin, A., Kushan-Wells, L. et al. Copy number variation at the 22q11.2 locus influences prevalence, severity, and psychiatric impact of sleep disturbance. J Neurodevelop Disord 14, 41 (2022).

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